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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
61
ATAC-seq
31
ChIP-seq
7
DNase-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
74
Transcription
68
DNA accessibility
31
DNA binding
Target of assay
22
histone
22
histone modification
14
broad histone mark
9
control
8
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
52
February, 2023
47
October, 2019
5
June, 2019
4
May, 2019
3
February, 2020
2
August, 2021
2
July, 2019
Available data
99
bam
87
bed narrowPeak
82
bigWig
60
tsv
27
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
2
tagAlign
Organism
177
Homo sapiens
Biosample type
114
tissue
62
cell line
1
primary cell
Organ
927
pancreas
644
connective tissue
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
177
AMP
Genome assembly (visualization)
125
GRCh38
105
hg19
Lab
177
AMP-T2D consortium
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
islet of Langerhans
14
1
2
4
retina
3
15
3
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
smooth muscle cell of the coronary artery
1
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