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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
total RNA-seq
73
ATAC-seq
39
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
8
DNase-seq
7
pCHi-C
1
RRBS
Assay category
91
DNA accessibility
86
Transcription
39
DNA binding
1
DNA methylation
Target of assay
23
histone
23
histone modification
14
broad histone mark
10
control
9
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
66
February, 2023
47
October, 2019
19
April, 2020
9
June, 2019
5
May, 2019
4
July, 2019
3
February, 2020
2
August, 2021
2
March, 2020
1
May, 2021
Available data
109
bam
107
bed narrowPeak
91
bigWig
65
tsv
31
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
223
Homo sapiens
Biosample type
151
tissue
66
cell line
7
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
204
AMP
19
LungMap
1
T1D
Genome assembly (visualization)
134
GRCh38
127
hg19
Lab
204
AMP-T2D consortium
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
organ_slims!
blood
BIOSAMPLE
ASSAY
224 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
islet of Langerhans
14
1
2
4
retina
3
15
3
lung
9
10
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
retinal pigment epithelial cell
3
1
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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