Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
22
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
67
DNA accessibility
58
Transcription
28
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
22
October, 2019
20
June, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
1
March, 2020
Available data
114
bam
97
bigWig
86
bed narrowPeak
59
tsv
37
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
6
tagAlign
Organism
154
Homo sapiens
Biosample type
86
tissue
66
cell line
2
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
140
GRCh38
105
hg19
Lab
154
AMP-T2D consortium
organ_slims!
lung
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
154 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
3
2
tibial artery
1
1
19
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download