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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
62
total RNA-seq
52
ATAC-seq
38
DNase-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
90
DNA accessibility
72
DNA binding
64
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
transcription factor
RNA binding protein
Date released
69
October, 2019
68
February, 2021
35
February, 2023
34
June, 2019
11
May, 2019
8
July, 2019
4
February, 2020
2
August, 2021
Available data
185
bam
150
bigWig
140
bed narrowPeak
88
bigBed narrowPeak
64
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
231
Homo sapiens
Biosample type
167
tissue
62
cell line
2
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
450
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
ureter
16
blood
16
bodily fluid
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
231
AMP
Genome assembly (visualization)
198
GRCh38
163
hg19
Lab
231
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
transcription factor
BIOSAMPLE
ASSAY
231 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
tissue
coronary artery
4
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
2
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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