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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
49
DNA accessibility
29
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
5
July, 2019
4
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
98
bam
81
bigWig
69
bed narrowPeak
59
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
138
Homo sapiens
Biosample type
73
tissue
62
cell line
3
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
124
GRCh38
90
hg19
Lab
138
AMP-T2D consortium
organ_slims!
pituitary gland
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
138 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RRBS
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
pulmonary artery
2
pericardium
1
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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