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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
58
ATAC-seq
35
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
62
DNA accessibility
62
Transcription
35
DNA binding
Target of assay
21
histone
21
histone modification
14
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
28
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
111
bam
86
bigWig
83
bed narrowPeak
59
tsv
25
bigBed narrowPeak
7
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
160
Homo sapiens
Biosample type
92
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
160
AMP
Genome assembly (visualization)
137
GRCh38
106
hg19
Lab
160
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
160 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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