Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 56total RNA-seq
  • 45ATAC-seq
  • 27ChIP-seq
  • 4DNase-seq
  • 2single cell RNA-seq
Assay category
  • 58Transcription
  • 49DNA accessibility
  • 27DNA binding
Target of assay
  • 16histone
  • 16histone modification
  • 13broad histone mark
  • 8control
  • 3narrow histone mark
  • 3transcription factor
  • 1RNA binding protein
Date released
  • 64February, 2021
  • 35February, 2023
  • 22October, 2019
  • 4May, 2019
  • 3July, 2019
  • 2August, 2021
  • 2February, 2020
  • 2June, 2019
Available data
  • 95bam
  • 79bigWig
  • 68bed narrowPeak
  • 58tsv
  • 21bigBed narrowPeak
  • 4bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 4tagAlign
Organism
  • 134Homo sapiens
Biosample type
  • 68tissue
  • 64cell line
  • 2primary cell
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 134AMP
Genome assembly (visualization)
  • 122GRCh38
  • 87hg19
Lab
  • 134AMP-T2D consortium
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

134 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery13642
tibial artery11192
pulmonary artery2
cell line
smooth muscle cell of the coronary artery5284
primary cell
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego