Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
8
snATAC-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
107
DNA binding
16
DNA accessibility
9
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
54
transcription factor
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
control
13
RNA binding protein
10
chromatin remodeller
Date released
36
May, 2019
27
December, 2018
19
October, 2019
15
January, 2019
12
November, 2018
8
January, 2021
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
2
November, 2017
1
February, 2020
1
January, 2018
Available data
120
bam
119
bigWig
109
bed narrowPeak
108
bigBed narrowPeak
56
fastq
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
140
Homo sapiens
Biosample type
55
cell line
51
tissue
34
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
8
T1D
Genome assembly (visualization)
120
hg19
113
GRCh38
Lab
132
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
organ_slims!
artery
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
140 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
cell line
GM12878
54
1
tissue
aorta
11
1
1
4
2
1
ascending aorta
13
1
2
thoracic aorta
12
2
1
primary cell
endothelial cell of umbilical vein
15
2
2
1
peripheral blood mononuclear cell
8
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
Download