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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
28
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
13
February, 2018
10
December, 2017
8
August, 2021
8
January, 2021
4
January, 2019
3
May, 2021
3
November, 2018
2
December, 2018
2
January, 2018
Available data
42
bam
33
fastq
30
bigWig
14
bed narrowPeak
14
tsv
3
bed bed3+
3
bigBed narrowPeak
Organism
53
Homo sapiens
Biosample type
26
in vitro differentiated cells
18
cell line
9
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
9
T1D
Genome assembly (visualization)
30
hg19
29
GRCh38
1
hg18
Lab
44
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
GM12878
9
1
H1-hESC
8
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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