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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
32
DNase-seq
17
total RNA-seq
8
snATAC-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
212
DNA binding
46
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
192
histone
192
histone modification
122
narrow histone mark
broad histone mark
54
transcription factor
37
control
13
RNA binding protein
10
chromatin remodeller
Date released
87
October, 2019
49
November, 2017
30
June, 2019
27
December, 2018
18
January, 2019
18
July, 2019
17
November, 2018
13
May, 2019
12
February, 2020
8
January, 2021
6
October, 2017
3
March, 2020
1
February, 2023
1
January, 2018
Available data
242
bam
217
bigWig
196
bed narrowPeak
123
bigBed narrowPeak
75
fastq
73
tagAlign
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
290
Homo sapiens
Biosample type
200
tissue
61
cell line
29
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
282
AMP
8
T1D
Genome assembly (visualization)
210
GRCh38
194
hg19
Lab
282
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
290 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 78 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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