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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
68
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
54
transcription factor
11
control
11
histone
11
histone modification
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
4
broad histone mark
Date released
25
December, 2018
13
February, 2018
13
November, 2018
12
January, 2019
9
December, 2017
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
Available data
82
bam
73
fastq
72
bigWig
56
bed narrowPeak
44
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
92
Homo sapiens
Biosample type
59
cell line
25
in vitro differentiated cells
8
primary cell
Organ
937
pancreas
733
liver
674
connective tissue
epithelium
486
adipose tissue
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
8
T1D
Genome assembly (visualization)
72
hg19
71
GRCh38
1
hg18
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
artery
epithelium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
50
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
18
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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