Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
223
gene expression
174
accessible chromatin
149
target gene predictions
142
candidate regulatory elements
85
binding sites
74
chromatin state
65
differential activity
48
histone modifications
34
variant allelic effects
5
eQTL
2
caQTL
Date released
249
February, 2021
204
September, 2022
155
September, 2023
110
November, 2021
83
February, 2024
35
June, 2020
25
August, 2021
25
October, 2022
15
November, 2022
14
January, 2020
14
May, 2020
13
May, 2021
11
February, 2023
10
May, 2024
9
February, 2020
7
April, 2020
5
August, 2017
5
March, 2020
4
March, 2023
3
March, 2024
2
January, 2021
2
May, 2022
1
July, 2020
Available data
637
bed bed3+
275
tsv
131
bigWig
78
txt
69
bed bed9
3
csv
2
bigBed bed9
1
bigBed narrowPeak
Organism
1001
Homo sapiens
Biosample type
709
primary cell
215
cell line
57
tissue
20
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
727
AMP
155
KPMP
110
ENCODE
7
LungMap
2
T1D
Genome assembly (visualization)
709
hg19
261
GRCh38
organ_slims!
pancreas
penis
BIOSAMPLE
TYPE
1001 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
binding sites
chromatin state
differential activity
histone modifications
variant allelic effects
eQTL
caQTL
primary cell
endothelial cell
9
15
7
3
2
1
2
1
2
hepatocyte
13
8
3
2
1
1
4
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
2
5
1
+ See 136 more…
cell line
K562
1
23
7
2
7
1
GM12878
1
8
2
2
2
1
GM06990
1
1
2
2
1
1
GM19240
1
2
1
2
1
1
HAP-1
1
2
2
1
1
1
+ See 31 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
blood
2
kidney epithelium
1
1
+ See 11 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
+ See 2 more…
See all biosamples
Download