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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
30
ATAC-seq
24
DNase-seq
24
total RNA-seq
8
snATAC-seq
4
pCHi-C
1
RRBS
Assay category
100
DNA binding
62
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
52
transcription factor
28
histone
28
histone modification
18
control
16
broad histone mark
12
narrow histone mark
11
RNA binding protein
10
chromatin remodeller
Date released
63
October, 2019
31
February, 2023
27
December, 2018
25
June, 2019
18
January, 2019
15
November, 2018
8
January, 2021
2
February, 2020
1
January, 2018
1
July, 2019
Available data
132
bed narrowPeak
127
bam
110
bigWig
104
bigBed narrowPeak
60
fastq
24
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
10
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
191
Homo sapiens
Biosample type
117
tissue
61
cell line
13
primary cell
Organ
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
8
T1D
Genome assembly (visualization)
138
hg19
109
GRCh38
Lab
183
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
pancreas
BIOSAMPLE
ASSAY
191 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
tissue
tibial nerve
35
1
2
5
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
renal pelvis
10
+ See 2 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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