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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
36
DNase-seq
18
snATAC-seq
9
ATAC-seq
9
single cell RNA-seq
7
total RNA-seq
4
Hi-C
2
pCHi-C
1
WGBS
Assay category
130
DNA binding
63
DNA accessibility
16
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
51
transcription factor
34
broad histone mark
23
control
20
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
73
October, 2019
32
June, 2019
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
March, 2020
1
January, 2018
Available data
174
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
9
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
215
Homo sapiens
Biosample type
147
tissue
61
cell line
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
189
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
151
hg19
150
GRCh38
Lab
189
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
+ See 11 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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