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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
3
ATAC-seq
3
DNase-seq
2
WGBS
2
pCHi-C
Assay category
115
DNA binding
24
DNA accessibility
14
Transcription
2
DNA methylation
Target of assay
57
transcription factor
31
histone
31
histone modification
25
control
20
broad histone mark
11
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
42
October, 2019
34
December, 2018
25
January, 2019
24
November, 2018
19
April, 2020
8
January, 2021
2
March, 2020
1
February, 2020
1
January, 2018
1
October, 2017
Available data
126
bam
102
bigWig
95
bed narrowPeak
93
bigBed narrowPeak
84
fastq
7
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
156
Homo sapiens
Biosample type
88
tissue
61
cell line
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
101
GRCh38
100
hg19
Lab
130
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
1
2
spleen
20
1
1
2
1
lung
10
9
1
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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