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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
79
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
86
bam
70
bigWig
65
bed narrowPeak
64
bigBed narrowPeak
60
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
96
Homo sapiens
Biosample type
61
cell line
27
tissue
8
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
8
T1D
Genome assembly (visualization)
70
hg19
69
GRCh38
Lab
88
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
ureter
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
60
1
tissue
tibial nerve
19
5
1
2
primary cell
peripheral blood mononuclear cell
8
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