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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 7DNase-seq
  • 6single cell RNA-seq
  • 6total RNA-seq
  • 5Hi-C
  • 2ATAC-seq
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 88DNA binding
  • 12Transcription
  • 10DNA accessibility
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 68histone
  • 68histone modification
  • 45broad histone mark
  • 23narrow histone mark
  • 17control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 47October, 2019
  • 45May, 2019
  • 8July, 2019
  • 6August, 2021
  • 4March, 2020
  • 3June, 2019
  • 3November, 2017
  • 2February, 2020
Available data
  • 104bam
  • 86bigWig
  • 76bed narrowPeak
  • 74bigBed narrowPeak
  • 13tsv
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 9bed bed3+
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 118Homo sapiens
Biosample type
  • 89tissue
  • 29primary cell
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 118AMP
Genome assembly (visualization)
  • 87hg19
  • 80GRCh38
Lab
  • 118AMP-T2D consortium
Audit category:
  • 1audit script error
organ_slims!
  • heart
BIOSAMPLE
ASSAY

118 results

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Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery23211
aorta1341121
ascending aorta1612
thoracic aorta1621
pulmonary artery2
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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