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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 82ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 7DNase-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 2WGBS
  • 1pCHi-C
Assay category
  • 82DNA binding
  • 67Transcription
  • 53DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 55histone
  • 55histone modification
  • 36broad histone mark
  • 19control
  • 19narrow histone mark
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 35February, 2023
  • 26October, 2019
  • 11July, 2019
  • 6August, 2021
  • 5June, 2019
  • 3February, 2020
  • 3March, 2020
  • 3November, 2017
Available data
  • 160bam
  • 135bigWig
  • 116bed narrowPeak
  • 68tsv
  • 66bigBed narrowPeak
  • 9bed bed3+
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 6tagAlign
  • 3fastq
  • 2hdf5
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
Organism
  • 208Homo sapiens
Biosample type
  • 133tissue
  • 66cell line
  • 9primary cell
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 208AMP
Genome assembly (visualization)
  • 175GRCh38
  • 142hg19
Lab
  • 208AMP-T2D consortium
organ_slims!
  • vein
BIOSAMPLE
ASSAY

208 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery51362
tibial artery23112
aorta1314121
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
brain microvascular endothelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
smooth muscle cell of the coronary artery1
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