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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
60
total RNA-seq
47
ATAC-seq
8
snATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
2
pCHi-C
1
Hi-C
Assay category
143
DNA binding
66
Transcription
60
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
59
histone
59
histone modification
58
transcription factor
36
broad histone mark
24
control
23
narrow histone mark
13
RNA binding protein
10
chromatin remodeller
Date released
66
February, 2021
50
May, 2019
35
February, 2023
30
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
8
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
June, 2019
1
January, 2018
Available data
214
bam
182
bigWig
166
bed narrowPeak
116
bigBed narrowPeak
68
tsv
60
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
274
Homo sapiens
Biosample type
138
tissue
127
cell line
9
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
266
AMP
8
T1D
Genome assembly (visualization)
224
GRCh38
190
hg19
Lab
266
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
epithelium
mammary gland
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
smooth muscle cell of the coronary artery
1
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