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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
23
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
63
DNA binding
26
DNA accessibility
9
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
12
control
3
RNA binding protein
transcription factor
Date released
43
May, 2019
23
October, 2019
21
June, 2019
8
July, 2019
4
August, 2021
4
March, 2020
2
November, 2017
1
February, 2020
Available data
94
bam
81
bigWig
71
bed narrowPeak
69
bigBed narrowPeak
26
bed broadPeak
26
bigBed broadPeak
25
bed bed3+
10
tsv
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
1
tar
Organism
106
Homo sapiens
Biosample type
78
tissue
28
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
82
hg19
75
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
15
1
2
thoracic aorta
15
2
1
renal pelvis
10
left renal pelvis
4
+ See 3 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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