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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
13
ATAC-seq
9
total RNA-seq
5
DNase-seq
5
Hi-C
4
single cell RNA-seq
2
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
65
DNA binding
19
DNA accessibility
13
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
8
February, 2021
8
February, 2023
8
July, 2019
5
March, 2020
4
August, 2021
3
June, 2019
3
November, 2017
1
February, 2020
Available data
86
bam
65
bigWig
63
bed narrowPeak
54
bigBed narrowPeak
11
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
4
bed bed3
4
txt
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
106
Homo sapiens
Biosample type
77
tissue
29
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
78
hg19
67
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
pCHi-C
FAIRE-seq
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 11 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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