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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 56total RNA-seq
  • 46ATAC-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 4Hi-C
  • 2WGBS
  • 1FAIRE-seq
Assay category
  • 99DNA binding
  • 62Transcription
  • 56DNA accessibility
  • 43D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 9July, 2019
  • 6August, 2021
  • 5June, 2019
  • 3November, 2017
  • 2March, 2020
Available data
  • 178bam
  • 148bigWig
  • 129bed narrowPeak
  • 79bigBed narrowPeak
  • 62tsv
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11bed bed3+
  • 6tagAlign
  • 3fastq
  • 2hdf5
  • 2hic
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 223Homo sapiens
Biosample type
  • 129tissue
  • 66cell line
  • 28primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 223AMP
Genome assembly (visualization)
  • 185GRCh38
  • 156hg19
Lab
  • 223AMP-T2D consortium
Audit category:
  • 1audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

223 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery5362
tibial artery2312
aorta131412
thoracic aorta1621
ascending aorta1611
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17211
brain microvascular endothelial cell311
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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