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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 54ChIP-seq
  • 46ATAC-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 67Transcription
  • 56DNA accessibility
  • 54DNA binding
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 35February, 2023
  • 28May, 2019
  • 24October, 2019
  • 11July, 2019
  • 6August, 2021
  • 5June, 2019
  • 4March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 135bam
  • 107bigWig
  • 88bed narrowPeak
  • 68tsv
  • 38bigBed narrowPeak
  • 11bed bed3+
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 6tagAlign
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 185Homo sapiens
Biosample type
  • 97tissue
  • 66cell line
  • 22primary cell
Organ
  • 868pancreas
  • 749liver
  • 640connective tissue
  • 480epithelium
  • 471adipose tissue
  • 339kidney
  • 336heart
  • 216brain
  • 191vasculature
  • 185blood vessel
  • 159bone element
  • 127artery
  • 88limb
  • 77musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 33embryo
  • 27nerve
  • 21spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 185AMP
Genome assembly (visualization)
  • 146GRCh38
  • 116hg19
Lab
  • 185AMP-T2D consortium
Audit category:
  • 1audit script error
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

185 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery15362
aorta164121
tibial artery1912
thoracic aorta291
ascending aorta281
cell line
smooth muscle cell of the coronary artery5268
primary cell
endothelial cell of umbilical vein8221
brain microvascular endothelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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