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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 46ATAC-seq
  • 29ChIP-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 67Transcription
  • 56DNA accessibility
  • 29DNA binding
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 35February, 2023
  • 14May, 2019
  • 14October, 2019
  • 11July, 2019
  • 6August, 2021
  • 5June, 2019
  • 4March, 2020
  • 3February, 2020
  • 2November, 2017
Available data
  • 110bam
  • 83bigWig
  • 68tsv
  • 64bed narrowPeak
  • 14bigBed narrowPeak
  • 11bed bed3+
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 6tagAlign
  • 3hic
  • 2bedpe bed3+
  • 2fastq
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 160Homo sapiens
Biosample type
  • 79tissue
  • 66cell line
  • 15primary cell
Organ
  • 795pancreas
  • 689liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 64musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 160AMP
Genome assembly (visualization)
  • 122GRCh38
  • 92hg19
Lab
  • 160AMP-T2D consortium
Audit category:
  • 1audit script error
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

160 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery13632
aorta124121
tibial artery1152
thoracic aorta215
ascending aorta241
cell line
smooth muscle cell of the coronary artery5286
primary cell
endothelial cell of umbilical vein2221
brain microvascular endothelial cell211
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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