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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 91ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 91DNA binding
  • 67Transcription
  • 56DNA accessibility
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • transcription factor
  • 4RNA binding protein
Date released
  • 62February, 2021
  • 47May, 2019
  • 47October, 2019
  • 35February, 2023
  • 11July, 2019
  • 6August, 2021
  • 5June, 2019
  • 4March, 2020
  • 3February, 2020
  • 2November, 2017
Available data
  • 172bam
  • 142bigWig
  • 121bed narrowPeak
  • 75bigBed narrowPeak
  • 68tsv
  • 12bed broadPeak
  • 12bigBed broadPeak
  • 11bed bed3+
  • 3hic
  • 2bedpe bed3+
  • 2fastq
  • 2hdf5
  • 2tagAlign
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 222Homo sapiens
Biosample type
  • 130tissue
  • 62cell line
  • 30primary cell
Organ
  • 927pancreas
  • 644connective tissue
  • 515epithelium
  • 474adipose tissue
  • 453liver
  • 376heart
  • 344kidney
  • 283brain
  • 227vasculature
  • 222blood vessel
  • 159bone element
  • 136artery
  • 122limb
  • 97musculature of body
  • 60eye
  • 43nerve
  • 34embryo
  • 22vein
  • 20lung
  • 19spleen
  • 18blood
  • 18bodily fluid
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 222AMP
Genome assembly (visualization)
  • 179GRCh38
  • 151hg19
Lab
  • 222AMP-T2D consortium
Audit category:
  • 1audit script error
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

222 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery41362
tibial artery23112
aorta1314121
ascending aorta1521
thoracic aorta1521
cell line
smooth muscle cell of the coronary artery2528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell211
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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