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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
59
ChIP-seq
18
DNase-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
59
DNA binding
39
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
June, 2019
17
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
143
bam
130
bigWig
88
txt
79
bed narrowPeak
71
bigBed narrowPeak
59
fastq
58
tsv
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
4
bed bed3
Organism
245
Homo sapiens
Biosample type
176
tissue
60
cell line
9
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
236
AMP
9
T1D
Genome assembly (visualization)
142
hg19
137
GRCh38
Lab
236
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
245 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
+ See 12 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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