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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
17
ATAC-seq
17
total RNA-seq
8
snATAC-seq
4
pCHi-C
3
DNase-seq
Assay category
62
DNA binding
28
DNA accessibility
17
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
3
histone
3
histone modification
3
narrow histone mark
Date released
27
December, 2018
21
October, 2019
18
January, 2019
17
February, 2023
15
November, 2018
8
January, 2021
3
June, 2019
1
February, 2020
1
January, 2018
Available data
72
bed narrowPeak
63
bam
60
fastq
58
bigWig
57
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
tsv
Organism
111
Homo sapiens
Biosample type
61
cell line
42
tissue
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
103
AMP
8
T1D
Genome assembly (visualization)
73
hg19
57
GRCh38
Lab
103
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
epithelium
stomach
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
DNase-seq
cell line
GM12878
60
1
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
primary cell
peripheral blood mononuclear cell
8
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