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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
38
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
78
DNA binding
56
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
histone
65
histone modification
51
transcription factor
43
broad histone mark
25
control
22
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
32
June, 2019
32
October, 2019
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
March, 2020
1
May, 2019
Available data
130
bam
100
bed narrowPeak
100
bigWig
92
bigBed narrowPeak
59
fastq
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
148
Homo sapiens
Biosample type
73
tissue
60
cell line
15
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
8
T1D
Genome assembly (visualization)
107
hg19
104
GRCh38
Lab
140
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
1
inconsistent ontology term
organ_slims!
gonad
target.investigated_as!
histone
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
11
2
1
5
muscle of arm
17
muscle of leg
1
13
1
tibial artery
5
2
1
1
gastrocnemius medialis
1
4
+ See 8 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
2
2
2
1
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