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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
2
ATAC-seq
1
RRBS
1
pCHi-C
1
total RNA-seq
Assay category
61
DNA binding
20
DNA accessibility
10
Transcription
1
DNA methylation
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
2
July, 2019
2
October, 2019
1
January, 2018
1
March, 2020
Available data
62
bam
60
fastq
57
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
92
Homo sapiens
Biosample type
61
cell line
23
tissue
9
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
58
hg19
56
GRCh38
Lab
66
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
RRBS
pCHi-C
total RNA-seq
cell line
GM12878
60
1
tissue
lung
10
9
1
islet of Langerhans
1
pericardium
1
pituitary gland
1
primary cell
peripheral blood mononuclear cell
8
pericardium fibroblast
1
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