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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
8
snATAC-seq
5
total RNA-seq
3
ATAC-seq
3
DNase-seq
2
WGBS
1
pCHi-C
Assay category
105
DNA binding
14
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
57
transcription factor
31
histone
31
histone modification
25
control
20
broad histone mark
11
narrow histone mark
10
RNA binding protein
chromatin remodeller
3
other context
3
other post-translational modification
Date released
42
October, 2019
32
December, 2018
22
November, 2018
19
January, 2019
8
January, 2021
1
February, 2020
1
January, 2018
1
March, 2020
1
October, 2017
Available data
116
bam
92
bigWig
85
bed narrowPeak
83
bigBed narrowPeak
74
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
127
Homo sapiens
Biosample type
68
tissue
51
cell line
8
primary cell
Organ
946
pancreas
768
liver
682
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
119
AMP
8
T1D
Genome assembly (visualization)
91
GRCh38
90
hg19
Lab
119
AMP-T2D consortium
8
Kyle Gaulton, UCSD
organ_slims!
epithelium
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
1
2
spleen
20
1
1
2
1
cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
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