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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
20
DNase-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
Assay category
95
DNA binding
30
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
42
October, 2019
27
December, 2018
18
January, 2019
18
June, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
120
bam
104
bigWig
99
bed narrowPeak
98
bigBed narrowPeak
60
fastq
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
5
tsv
Organism
130
Homo sapiens
Biosample type
61
cell line
61
tissue
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
8
T1D
Genome assembly (visualization)
104
hg19
103
GRCh38
Lab
122
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
bone element
vasculature
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
DNase-seq
snATAC-seq
total RNA-seq
ATAC-seq
cell line
GM12878
60
1
tissue
tibial nerve
35
2
5
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
primary cell
peripheral blood mononuclear cell
8
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