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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
85
total RNA-seq
84
RNA microarray
65
DNase-seq
17
ATAC-seq
9
Hi-C
7
RRBS
6
small RNA-seq
4
pCHi-C
4
single cell RNA-seq
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
257
DNA binding
95
Transcription
84
DNA accessibility
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
91
November, 2017
86
October, 2019
73
June, 2019
35
May, 2019
28
July, 2019
26
August, 2017
16
October, 2017
14
February, 2020
9
February, 2023
7
March, 2020
2
May, 2022
2
November, 2018
1
January, 2018
1
May, 2021
Available data
366
bam
348
bigWig
271
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
93
tsv
89
txt
71
bigBed broadPeak
69
bed bed3+
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
5
bed bed3
3
hdf5
2
bedpe bed3+
2
hic
1
tagAlign bed3+
Organism
541
Homo sapiens
Biosample type
505
tissue
36
primary cell
Organ
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
540
AMP
1
T1D
Genome assembly (visualization)
336
GRCh38
307
hg19
Lab
540
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
96
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
organ_slims!
pancreas
BIOSAMPLE
ASSAY
541 results
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ChIP-seq
total RNA-seq
RNA microarray
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
WGBS
snATAC-seq
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
skeletal muscle tissue
22
1
1
4
1
1
1
layer of hippocampus
23
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primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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