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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
84
RNA microarray
79
total RNA-seq
30
DNase-seq
16
ATAC-seq
5
pCHi-C
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
216
DNA binding
86
Transcription
47
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
189
histone
189
histone modification
119
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
150
February, 2021
90
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
9
February, 2023
4
March, 2020
2
November, 2018
1
May, 2021
Available data
301
bam
271
bigWig
205
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
88
txt
86
tsv
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
15
fastq
5
bed bed3
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
441
Homo sapiens
Biosample type
429
tissue
12
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
440
AMP
1
T1D
Genome assembly (visualization)
277
GRCh38
224
hg19
Lab
440
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
441 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
small RNA-seq
single cell RNA-seq
Hi-C
FAIRE-seq
RRBS
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 93 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
+ See 1 more…
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