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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
79
total RNA-seq
32
DNase-seq
16
ATAC-seq
4
pCHi-C
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
86
Transcription
49
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
9
February, 2023
3
March, 2020
2
November, 2018
1
May, 2021
Available data
309
bam
280
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
85
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
446
Homo sapiens
Biosample type
424
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
445
AMP
1
T1D
Genome assembly (visualization)
283
GRCh38
234
hg19
Lab
445
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
embryo
BIOSAMPLE
ASSAY
446 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 92 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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