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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
261
gene expression
238
accessible chromatin
159
target gene predictions
153
candidate regulatory elements
93
differential activity
87
chromatin state
57
binding sites
44
histone modifications
42
variant allelic effects
12
eQTL
3
Fine-mapped variants
3
caQTL
Date released
256
February, 2021
245
September, 2022
155
September, 2023
129
November, 2021
77
February, 2024
38
March, 2023
36
May, 2021
35
June, 2020
30
August, 2021
22
January, 2021
17
May, 2020
16
January, 2020
15
November, 2022
12
February, 2023
12
March, 2020
11
February, 2020
8
October, 2022
7
April, 2020
6
August, 2017
6
August, 2018
5
May, 2022
5
October, 2019
3
March, 2024
2
January, 2022
2
November, 2019
1
July, 2020
1
September, 2018
Available data
696
bed bed3+
337
tsv
191
bigWig
80
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
4
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
1
bed bed9+
Organism
1152
Homo sapiens
Biosample type
846
primary cell
152
tissue
128
cell line
26
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
837
AMP
155
KPMP
129
ENCODE
22
T1D
7
LungMap
2
community
Genome assembly (visualization)
789
hg19
288
GRCh38
2
hg18
BIOSAMPLE
TYPE
1152 results
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Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
7
2
1
2
1
2
hepatocyte
13
8
3
1
1
1
4
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
2
1
+ See 154 more…
tissue
liver
1
4
10
13
1
9
1
2
7
1
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
right lobe of liver
1
1
2
1
1
3
+ See 31 more…
cell line
EndoC_BH1
8
8
1
3
1
HepG2
2
3
2
2
3
5
MG63
1
1
2
1
1
1
HuH-7
1
1
1
1
1
1
OCI-LY1
1
2
1
1
1
+ See 22 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
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