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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
63
total RNA-seq
14
ChIP-seq
13
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
63
Transcription
14
DNA accessibility
14
DNA binding
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
8
February, 2023
7
January, 2019
6
November, 2018
4
December, 2018
1
February, 2020
1
March, 2020
1
May, 2021
1
October, 2017
Available data
88
txt
84
bam
68
bigWig
60
tsv
18
fastq
16
bed narrowPeak
7
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
179
Homo sapiens
Biosample type
178
tissue
1
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
178
AMP
1
T1D
Genome assembly (visualization)
78
hg19
76
GRCh38
Lab
178
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
organ_slims!
intestine
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
179 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
14
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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