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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
20
DNase-seq
17
ChIP-seq
12
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
33
DNA accessibility
17
DNA binding
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
150
February, 2021
21
October, 2019
18
June, 2019
8
February, 2023
1
March, 2020
1
May, 2021
Available data
104
bam
91
bigWig
88
txt
58
tsv
39
bed narrowPeak
31
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
20
bed bed3+
4
bed bed3
2
hic
1
bedpe bed3+
1
tar
Organism
199
Homo sapiens
Biosample type
176
tissue
23
primary cell
Organ
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
198
AMP
1
T1D
Genome assembly (visualization)
105
hg19
96
GRCh38
Lab
198
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
199 results
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RNA microarray
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
17
2
1
megakaryocyte
1
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