Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
357
candidate regulatory elements
287
gene expression
257
target gene predictions
252
accessible chromatin
181
chromatin state
94
differential activity
55
binding sites
50
variant allelic effects
41
histone modifications
8
eQTL
2
caQTL
Date released
513
September, 2022
374
February, 2021
160
September, 2023
133
November, 2021
79
February, 2024
43
June, 2020
40
May, 2021
38
March, 2023
35
August, 2021
28
May, 2020
22
January, 2021
20
January, 2020
15
November, 2022
12
February, 2023
11
March, 2020
10
February, 2020
8
October, 2022
7
April, 2020
7
August, 2017
7
March, 2024
6
August, 2018
5
October, 2019
4
January, 2022
3
May, 2022
1
April, 2019
1
July, 2020
1
May, 2019
1
November, 2019
Available data
1015
bed bed3+
360
tsv
199
bigWig
173
bed bed9
90
txt
14
bigBed narrowPeak
6
csv
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
1
bed bed9+
Organism
1584
Homo sapiens
Biosample type
858
primary cell
586
tissue
113
cell line
27
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1260
AMP
160
KPMP
133
ENCODE
22
T1D
7
LungMap
2
community
Genome assembly (visualization)
1192
hg19
385
GRCh38
organ_slims!
adipose tissue
BIOSAMPLE
TYPE
1584 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
accessible chromatin
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
7
15
2
2
1
1
2
hepatocyte
1
13
3
8
1
1
2
4
epithelial cell of proximal tubule
2
16
1
1
1
1
1
glomerular endothelial cell
2
14
1
2
1
1
endothelial cell of umbilical vein
6
4
2
5
2
1
+ See 160 more…
tissue
kidney
29
7
14
10
16
1
1
2
1
small intestine
29
17
1
15
1
large intestine
27
14
1
13
1
right kidney
20
10
1
10
1
renal cortex interstitium
20
9
1
9
1
+ See 48 more…
cell line
EndoC_BH1
8
1
8
3
1
HEK293
3
1
1
1
2
1
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
+ See 24 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 5 more…
See all biosamples
Download