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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
29
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
35
DNA accessibility
29
DNA binding
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
185
histone
histone modification
115
narrow histone mark
70
broad histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
29
June, 2019
17
July, 2019
16
November, 2017
12
February, 2020
8
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
74
bam
52
bigWig
34
bed narrowPeak
34
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
26
tsv
19
tagAlign
9
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
94
Homo sapiens
Biosample type
80
tissue
14
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
47
GRCh38
43
hg19
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
pituitary gland
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
94 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 28 more…
primary cell
astrocyte of the cerebellum
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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