Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
253
candidate regulatory elements
197
accessible chromatin
189
target gene predictions
150
chromatin state
85
histone modifications
74
binding sites
69
gene expression
51
eQTL
42
Fine-mapped variants
33
variant allelic effects
14
differential activity
2
caQTL
2
pQTL
Date released
387
September, 2022
286
February, 2021
60
November, 2021
56
June, 2020
47
March, 2020
37
January, 2020
30
May, 2021
29
February, 2020
29
November, 2022
28
May, 2020
25
February, 2023
24
January, 2022
23
October, 2022
21
February, 2024
20
September, 2023
14
August, 2017
11
August, 2021
7
March, 2023
4
May, 2019
3
April, 2020
3
May, 2022
3
November, 2020
2
January, 2021
2
May, 2024
2
October, 2019
2
September, 2018
1
August, 2018
1
January, 2018
1
June, 2021
1
March, 2024
1
November, 2019
Available data
843
bed bed3+
136
bed bed9
134
tsv
111
bigWig
8
bigBed bed9
7
txt
1
bigBed narrowPeak
Organism
1160
Homo sapiens
Biosample type
516
tissue
366
primary cell
214
cell line
63
in vitro differentiated cells
2
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1075
AMP
60
ENCODE
15
KPMP
4
ITG
3
LungMap
2
T1D
2
community
Genome assembly (visualization)
1043
hg19
312
GRCh38
2
hg18
BIOSAMPLE
TYPE
1161 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
accessible chromatin
target gene predictions
chromatin state
histone modifications
binding sites
gene expression
eQTL
Fine-mapped variants
variant allelic effects
differential activity
caQTL
pQTL
tissue
brain
29
2
16
18
3
1
1
2
1
retina
6
23
3
3
1
1
1
1
1
adipose tissue
7
2
8
6
1
3
4
1
caudate nucleus
5
2
3
4
1
1
2
3
1
subcutaneous adipose tissue
2
2
1
5
6
3
1
1
+ See 72 more…
primary cell
fibroblast
16
4
1
2
6
pericyte cell
1
10
10
1
osteoblast
2
5
2
1
2
3
2
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
1
2
1
2
4
+ See 59 more…
cell line
MCF-7
9
1
6
5
2
3
SK-N-DZ
4
1
2
2
1
SK-N-SH
4
3
2
1
pituitary stalk
10
GM12864
2
1
1
1
1
2
+ See 40 more…
in vitro differentiated cells
adipocyte
4
4
6
6
1
1
1
mesenchymal stem cell
3
1
3
2
1
1
retinal pigment epithelial cell
6
chondrocyte
5
mammary gland epithelial cell
1
1
1
+ See 13 more…
stem cell
mesenchymal stem cell
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download