Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
305
candidate regulatory elements
278
gene expression
272
accessible chromatin
247
target gene predictions
175
chromatin state
92
differential activity
77
histone modifications
64
variant allelic effects
59
binding sites
45
Fine-mapped variants
37
eQTL
2
caQTL
Date released
469
September, 2022
362
February, 2021
158
September, 2023
127
November, 2021
77
February, 2024
53
March, 2020
52
June, 2020
48
January, 2020
48
May, 2021
42
May, 2020
38
March, 2023
33
February, 2020
23
August, 2021
20
January, 2021
20
January, 2022
15
November, 2022
12
February, 2023
11
October, 2022
9
August, 2017
7
April, 2020
6
August, 2018
6
May, 2019
5
March, 2024
5
October, 2019
4
November, 2019
2
May, 2022
1
July, 2020
Available data
1024
bed bed3+
409
tsv
209
bigWig
166
bed bed9
78
txt
14
bigBed narrowPeak
12
bigBed bed9
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
1652
Homo sapiens
Biosample type
842
primary cell
656
tissue
124
cell line
30
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1342
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
1253
hg19
462
GRCh38
BIOSAMPLE
TYPE
1653 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
accessible chromatin
target gene predictions
chromatin state
differential activity
histone modifications
variant allelic effects
binding sites
Fine-mapped variants
eQTL
caQTL
primary cell
endothelial cell
9
15
7
1
2
2
1
2
hepatocyte
1
13
8
3
1
4
2
1
epithelial cell of proximal tubule
2
16
1
1
1
1
1
glomerular endothelial cell
2
14
2
1
1
1
endothelial cell of umbilical vein
6
2
4
5
1
2
+ See 153 more…
tissue
brain
29
1
2
16
18
3
1
1
2
muscle of arm
33
1
16
16
1
muscle of leg
27
2
14
15
tibial nerve
6
2
3
3
4
2
3
2
caudate nucleus
5
1
2
3
4
1
1
3
2
+ See 101 more…
cell line
EndoC_BH1
8
8
1
3
1
SK-N-DZ
4
1
2
2
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 20 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 7 more…
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download