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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
747
ChIP-seq
218
total RNA-seq
42
ATAC-seq
38
DNase-seq
9
pCHi-C
7
small RNA-seq
5
Hi-C
5
WGBS
4
single cell RNA-seq
2
RRBS
2
STARR-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
747
DNA binding
229
Transcription
81
DNA accessibility
7
DNA methylation
5
3D chromatin structure
1
DNA sequencing
Target of assay
337
transcription factor
275
histone modification
274
histone
170
narrow histone mark
135
control
104
broad histone mark
82
recombinant protein
57
RNA binding protein
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
400
November, 2017
194
May, 2020
113
October, 2019
55
November, 2018
54
August, 2017
48
December, 2017
40
May, 2022
32
June, 2019
31
August, 2021
28
May, 2019
24
July, 2019
18
February, 2023
16
October, 2017
14
February, 2020
5
January, 2019
5
March, 2020
3
February, 2021
1
December, 2018
Available data
893
bam
814
bigWig
637
bed narrowPeak
467
bigBed narrowPeak
465
fastq
200
tagAlign
198
tsv
106
bed broadPeak
97
bigBed broadPeak
43
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bed bed3
2
bedpe bed3+
2
hdf5
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
1081
Homo sapiens
Biosample type
668
tissue
401
cell line
12
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1081
AMP
Genome assembly (visualization)
771
hg19
721
GRCh38
Lab
1010
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
inconsistent replicate
Audit category:
17
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
1081 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
WGBS
single cell RNA-seq
RRBS
STARR-seq
FAIRE-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
1
1
1
3
1
1
brain
20
1
1
14
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
15
3
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cell line
HepG2
378
14
1
2
2
1
2
1
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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