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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
35
DNase-seq
22
total RNA-seq
6
ATAC-seq
4
pCHi-C
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
56
DNA binding
42
DNA accessibility
29
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
histone
217
histone modification
127
narrow histone mark
90
broad histone mark
50
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
30
June, 2019
27
October, 2019
18
July, 2019
18
November, 2017
13
February, 2020
11
November, 2018
7
December, 2018
5
October, 2017
4
March, 2020
3
May, 2019
1
February, 2023
1
January, 2019
Available data
113
bam
73
bigWig
47
bed narrowPeak
45
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
33
tsv
29
fastq
19
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
138
Homo sapiens
Biosample type
120
tissue
18
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
66
GRCh38
62
hg19
Lab
138
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
brain
3
14
1
1
1
spleen
14
1
1
1
2
tibial nerve
11
2
5
1
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 32 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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