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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
DNase-seq
62
ChIP-seq
24
total RNA-seq
13
ATAC-seq
7
Hi-C
4
small RNA-seq
3
WGBS
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
83
DNA accessibility
62
DNA binding
31
Transcription
7
3D chromatin structure
5
DNA methylation
Target of assay
histone
242
histone modification
134
narrow histone mark
108
broad histone mark
56
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
62
June, 2019
35
October, 2019
23
July, 2019
18
November, 2017
15
February, 2020
11
November, 2018
7
December, 2018
6
February, 2021
5
October, 2017
4
May, 2019
3
March, 2020
1
February, 2023
1
January, 2019
Available data
161
bam
109
bigWig
88
bed narrowPeak
79
bigBed narrowPeak
72
bed bed3+
72
bed broadPeak
72
bigBed broadPeak
34
tsv
29
fastq
19
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
191
Homo sapiens
Biosample type
173
tissue
18
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
191
AMP
Genome assembly (visualization)
108
GRCh38
103
hg19
Lab
191
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
191 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
14
3
1
1
1
spleen
1
14
1
2
1
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
1
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primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
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