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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
745
ChIP-seq
201
total RNA-seq
35
DNase-seq
26
ATAC-seq
7
small RNA-seq
5
Hi-C
5
WGBS
5
pCHi-C
4
single cell RNA-seq
2
RRBS
2
STARR-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
745
DNA binding
212
Transcription
62
DNA accessibility
7
DNA methylation
5
3D chromatin structure
1
DNA sequencing
Target of assay
337
transcription factor
273
histone modification
272
histone
168
narrow histone mark
135
control
104
broad histone mark
82
recombinant protein
57
RNA binding protein
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
400
November, 2017
194
May, 2020
92
October, 2019
55
November, 2018
54
August, 2017
48
December, 2017
40
May, 2022
31
August, 2021
29
June, 2019
28
May, 2019
24
July, 2019
16
October, 2017
13
February, 2020
5
January, 2019
5
March, 2020
3
February, 2021
1
December, 2018
1
February, 2023
Available data
890
bam
811
bigWig
619
bed narrowPeak
465
fastq
464
bigBed narrowPeak
200
tagAlign
195
tsv
103
bed broadPeak
94
bigBed broadPeak
40
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bed bed3
2
bedpe bed3+
2
hdf5
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
1039
Homo sapiens
Biosample type
626
tissue
401
cell line
12
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1039
AMP
Genome assembly (visualization)
753
hg19
718
GRCh38
Lab
968
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
inconsistent replicate
Audit category:
17
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
1039 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
WGBS
pCHi-C
single cell RNA-seq
RRBS
STARR-seq
FAIRE-seq
whole genome sequencing assay
tissue
liver
145
167
2
20
1
1
3
1
1
1
brain
20
1
14
1
1
layer of hippocampus
23
right lobe of liver
10
3
2
1
2
1
caudate nucleus
15
1
1
+ See 79 more…
cell line
HepG2
378
14
1
2
1
2
2
1
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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