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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
Assay category
177
DNA binding
Target of assay
341
transcription factor
290
histone modification
289
histone
177
narrow histone mark
139
control
112
broad histone mark
82
recombinant protein
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
76
October, 2019
38
November, 2017
27
May, 2020
13
August, 2017
10
May, 2019
7
December, 2017
4
August, 2021
2
October, 2017
Available data
158
bigWig
157
bed narrowPeak
155
bam
94
tagAlign
47
bigBed narrowPeak
23
fastq
14
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tagAlign bed3+
Organism
177
Homo sapiens
Biosample type
158
tissue
9
cell line
5
in vitro differentiated cells
5
primary cell
Organ
117
brain
73
pancreas
60
liver
49
epithelium
40
heart
33
connective tissue
26
vasculature
25
blood vessel
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
177
AMP
Genome assembly (visualization)
148
GRCh38
144
hg19
Lab
175
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
intestine
BIOSAMPLE
ASSAY
177 results
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Clear Filters
ChIP-seq
tissue
liver
42
layer of hippocampus
8
angular gyrus
7
substantia nigra
6
caudate nucleus
5
+ See 65 more…
cell line
HepG2
9
in vitro differentiated cells
hepatocyte
5
primary cell
hepatocyte
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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