Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
182
candidate regulatory elements
124
target gene predictions
113
chromatin state
71
accessible chromatin
63
histone modifications
44
gene expression
40
eQTL
39
Fine-mapped variants
32
binding sites
21
variant allelic effects
4
differential activity
1
caQTL
Date released
295
September, 2022
162
February, 2021
49
March, 2020
32
January, 2020
30
February, 2024
29
June, 2020
22
January, 2022
22
May, 2020
20
February, 2020
15
May, 2021
10
August, 2017
10
August, 2021
9
November, 2021
8
October, 2022
4
March, 2023
4
May, 2019
3
September, 2023
2
March, 2024
2
May, 2022
2
May, 2024
2
November, 2019
1
July, 2020
1
September, 2018
Available data
495
bed bed3+
103
bed bed9
96
tsv
46
bigWig
7
bigBed bed9
3
csv
1
bam
Organism
733
Homo sapiens
Biosample type
505
tissue
112
cell line
105
primary cell
11
in vitro differentiated cells
1
stem cell
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
725
AMP
9
ENCODE
Genome assembly (visualization)
655
hg19
244
GRCh38
2
hg18
BIOSAMPLE
TYPE
734 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
gene expression
eQTL
Fine-mapped variants
binding sites
variant allelic effects
differential activity
caQTL
tissue
brain
29
16
18
2
3
1
2
1
1
small intestine
29
17
15
1
1
liver
13
10
9
4
2
1
7
1
1
1
caudate nucleus
5
3
4
2
1
1
2
3
1
substantia nigra
5
2
3
1
1
3
3
+ See 62 more…
cell line
HepG2
2
3
2
2
5
3
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 15 more…
primary cell
hepatocyte
2
3
1
8
4
13
1
2
endothelial cell of hepatic sinusoid
6
4
6
hepatic stellate cell
2
1
1
3
1
1
1
choroid plexus epithelial cell
2
1
1
1
1
1
astrocyte of the cerebellum
2
1
1
1
1
+ See 12 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download