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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
34
DNase-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
42
DNA binding
40
DNA accessibility
29
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
42
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
27
October, 2019
18
July, 2019
18
November, 2017
13
February, 2020
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
95
bam
63
bigWig
39
bed narrowPeak
38
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
31
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
118
Homo sapiens
Biosample type
100
tissue
18
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
56
GRCh38
54
hg19
Lab
118
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
small intestine
target.investigated_as!
histone
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
14
1
1
1
tibial nerve
11
2
5
1
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
2
1
1
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primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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