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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
273
ChIP-seq
35
DNase-seq
22
total RNA-seq
6
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
273
DNA binding
42
DNA accessibility
29
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
217
histone
217
histone modification
127
narrow histone mark
90
broad histone mark
50
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
128
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
17
October, 2017
13
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2023
Available data
309
bam
269
bigWig
244
bed narrowPeak
166
bigBed narrowPeak
118
tagAlign
50
bed broadPeak
45
fastq
41
bigBed broadPeak
38
bed bed3+
32
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
354
Homo sapiens
Biosample type
333
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
354
AMP
Genome assembly (visualization)
264
GRCh38
209
hg19
Lab
354
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
small intestine
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
spleen
20
1
1
1
2
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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