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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
pCHi-C
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
217
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
1
May, 2021
Available data
242
bam
221
bigWig
202
bed narrowPeak
127
bigBed narrowPeak
117
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
286
Homo sapiens
Biosample type
265
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
285
AMP
1
T1D
Genome assembly (visualization)
216
GRCh38
163
hg19
Lab
285
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
bone element
eye
pituitary gland
BIOSAMPLE
ASSAY
286 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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